| ago101 | ZLL/PNH homologous protein [Oryza sativa] | MTP_B73_0031 | DX572305 | MTP_B73_0031 | MTP_W22_0031 | DX572344 | mtp0031 | 2 | 0 | |
| ago104a | Argonaute and Dicer like- protein, PAZ | MTP_B73_0050 | DX572310 | MTP_B73_0050 | MTP_W22_0050 | DX572357 | mtp0050 | 0 | 0 | |
| ago111 | Argonaute and Dicer like-protein, PAZ domain containing protein [Oryza sativa] | MTP_B73_0029 | DX572304 | MTP_B73_0029 | MTP_W22_0029 | DX572356 | mtp0029 | 0 | 4 | |
| ago117 | AGO1 (ARGONAUTE 1) like protein | MTP_B73_0133 | ED989433 | MTP_B73_0133 | MTP_W22_0133 | ED989437 | mtp0133 | 0 | 5 | |
| ago119c | Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein, Piwi. Argonaut 4-like protein | MTP_B73_0110 | DX572327 | MTP_B73_0110 | MTP_W22_0110 | DX572332 | mtp0110 | 2 | 2 | |
| ago120v1 | AGO7 (ARGONAUTE7) like protein | MTP_B73_0136 | ED509327 | MTP_B73_0136 | MTP_W22_0136 | ED509333 | mtp0136 | 4 | 0 | |
| altdcd2 | FASS (FASS 1) (Arabidopsis) | MTP_B73_0162 | ER885868 | MTP_B73_0162 | MTP_W22_0162 | ER885873 | mtp0162 | 1 | 0 | |
| am | hypothetical meiosis protein | MTP_B73_0124 | ED509328 | MTP_B73_0124 | MTP_W22_0124 | ED509334 | mtp0124 | 1 | 5 | |
| as2 | ASYMMETRIC LEAVES2 | EI183455 | MTP_W22_0085 | EI183461 | mtp0085 | 2 | 0 | |||
| b1zm4 | putative glutathione peroxidase | MTP_B73_0101 | DX572329 | MTP_B73_0101 | MTP_W22_0101 | DX572330 | mtp0101 | 3 | 0 | |
| c1zm2 | Protein of unknown function (DUF1296); pfam06972, similar to gb protein [Sorghum bicolor] | MTP_B73_0103 | DX572321 | MTP_B73_0103 | MTP_W22_0103 | DX572333 | mtp0103 | 1 | 0 | |
| c1zm4 | putative Mechanosensitive ion channel; pfam00924 | MTP_B73_0105 | DX572323 | MTP_B73_0105 | mtp0105 | 3 | 0 | |||
| che101 | SNF5, transcription regulatory
protein homolog BSH [Arabidopsis thaliana] |
MTP_B73_0037 | DX572307 | MTP_B73_0037 | MTP_W22_0037 | DX572358 | mtp0037 | 0 | 0 | |
| chr106 | chromatin complex subunit A101 [Zea mays] | MTP_B73_0062 | DX572313 | MTP_B73_0062 | MTP_W22_0062 | DX572359 | mtp0062 | 4 | 4 | |
| chr120 | MOM (MAINTENANCE OF METHYLATION) [Arabidopsis thaliana] | MTP_B73_0063 | DX572314 | MTP_B73_0063 | MTP_W22_0063 | DX572360 | mtp0063 | 2 | 4 | |
| crd101a | chromdomain-containing protein CRD101 | MTP_B73_0055 | DX572312 | MTP_B73_0055 | MTP_W22_0055 | DX572334 | mtp0055 | 3 | 1 | |
| dcl101b | DCL1 (DICER-LIKE1); ATP-dependent helicase/ ribonuclease III | MTP_B73_0114 | DX572328 | MTP_B73_0114 | mtp0114 | 4 | 0 | |||
| dmt101 | putative cytosine-5 DNA methyltransferase [Zea mays] | MTP_B73_0009 | DX572297 | MTP_B73_0009 | MTP_W22_0009 | DX572345 | mtp0009 | 4 | 0 | |
| dmt102 | DNA (cytosine-5)-methyltransferase 1 (Chromomethylase 1) (Zea methyltransferase2) (Zmet2) (DNA cytosine methyltransferase MET2a). | MTP_B73_0018 | EI183454 | MTP_B73_0018 | MTP_W22_0018 | EI183460 | mtp0018 | 4 | 0 | |
| dmt103 | putative DNA cytosine methyltransferase Zmet3 [Zea mays] | MTP_B73_0007 | DX572295 | MTP_B73_0007 | MTP_W22_0007 | DX572346 | mtp0007 | 8 | 1 | |
| dmt105 | DNA methyltransferase 105 [Zea mays] | MTP_B73_0016 | DX572302 | MTP_B73_0016 | MTP_W22_0016 | DX572347 | mtp0016 | 5 | 2 | |
| dmt106 | DNA methyltransferase DMT106 [Zea mays] | MTP_B73_0006 | DX572296 | MTP_B73_0006 | MTP_W22_0006 | DX572373 | mtp0006 | 1 | 3 | |
| dmt107 | putative DNA cytosine methyltransferase Zmet3 [Zea mays] | MTP_B73_0036 | DX572306 | MTP_B73_0036 | MTP_W22_0036 | DX572348 | mtp0036 | 3 | 3 | |
| dng105 | DNA glycosylase family protein | MTP_B73_0129 | DX922421 | MTP_B73_0129 | MTP_W22_0129 | DX922425 | mtp0129 | 1 | 2 | |
| fea2 | fasciated ear2 [Zea mays] | MTP_B73_0077 | DX575018 | MTP_B73_0077 | MTP_W22_0077 | DX575003 | mtp0077 | 0 | 4 | |
| fie101 | fertilization-independent endosperm protein; FIE1 [Zea mays] | MTP_B73_0015 | DX572301 | MTP_B73_0015 | MTP_W22_0015 | DX572349 | mtp0015 | 0 | 0 | |
| fie102 | FIE2 [Zea mays]. fertilization-independent endosperm protein | MTP_B73_0065 | DX575027 | MTP_B73_0065 | mtp0065 | 1 | 0 | |||
| ganlab1 | hypothetical NAC domain protein | MTP_B73_0130 | EI183458 | MTP_B73_0130 | MTP_W22_0130 | EI183462 | mtp0130 | 0 | 0 | |
| gaoimp | 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase | MTP_B73_0156 | EI392739 | MTP_B73_0156 | MTP_W22_0156 | EI392745 | mtp0156 | 0 | 2 | |
| gaoip2k | inositol polyphosphate 2-kinase | MTP_B73_0140 | EI504706 | MTP_B73_0140 | MTP_W22_0140 | EI392745 | mtp0140 | 0 | 2 | |
| gaolkr | lysine-ketoglutarate reductase | MTP_B73_0150 | EI392740 | MTP_B73_0150 | MTP_W22_0150 | EI392746 | mtp0150 | 1 | 2 | |
| gaopt5k | 1-phosphatidylinositol-4-phosphate 5-kinase | MTP_B73_0142 | EI392741 | MTP_B73_0142 | MTP_W22_0142 | EI392747 | mtp0142 | 2 | 1 | |
| gaotres | Trehalase family protein | MTP_B73_0143 | EI392742 | MTP_B73_0143 | MTP_W22_0143 | EI392748 | mtp0143 | 0 | 0 | |
| gaots | threonine synthase-like protein | MTP_B73_0152 | EI392743 | MTP_B73_0152 | MTP_W22_0152 | EI392749 | mtp0152 | 1 | 1 | |
| hac110 | histone acetyl transferase [Zea mays]. | MTP_B73_0008 | EI183457 | MTP_B73_0008 | MTP_W22_0008 | EI183463 | mtp0008 | 4 | 0 | |
| hda105 | nucleolar histone deacetylase HD2-p39 | MTP_B73_0005 | DX572294 | MTP_B73_0005 | MTP_W22_0005 | DX572350 | mtp0005 | 1 | 0 | |
| hda110a | histone deacetylase HDA110 isoform 1 [Zea mays] | MTP_B73_0058 | DX575031 | MTP_B73_0058 | MTP_W22_0058 | DX575015 | mtp0058 | 1 | 0 | |
| hw56 | FIE2 [Zea mays] | MTP_B73_0095 | DX575026 | MTP_B73_0095 | MTP_W22_0095 | DX575011 | mtp0095 | 3 | 0 | |
| m69014 | MYB-like protein 1 | MTP_B73_0160 | EI951916 | MTP_B73_0160 | MTP_W22_0160 | EI951920 | mtp0160 | 1 | 0 | |
| magi6167 | Basic-leucine zipper (bZIP) transcription factor domain containing protein | MTP_B73_0138 | EI183453 | MTP_B73_0138 | MTP_W22_0138 | EI183459 | mtp0138 | 1 | 0 | |
| mbd120 | methyl-binding domain protein MBD101 [Zea mays] | MTP_B73_0073 | DX575029 | MTP_B73_0073 | MTP_W22_0073 | DX575013 | mtp0073 | 1 | 0 | |
| mre11a | DNA repair exonuclease [Medicago truncatula] | MTP_B73_0048 | DX572309 | MTP_B73_0048 | MTP_W22_0048 | DX572351 | mtp0048 | 2 | 0 | |
| ndc80x | putative Hec1 protein [Oryza sativa]. Protein involved in chromosome segregation | MTP_B73_0076 | DX572315 | MTP_B73_0076 | MTP_W22_0076 | DX572335 | mtp0076 | 2 | 0 | |
| orp2ex12 | Hypothetical protein | MTP_B73_0119 | DX922422 | MTP_B73_0119 | MTP_W22_0119 | DX922426 | mtp0119 | 3 | 0 | |
| orp2zm7 | hypothetical protein S250_18C08.12 [Sorghum bicolor]; Zn-finger, C-x8-C-x5-C-x3-H type domain containing protein | MTP_B73_0097 | DX572317 | MTP_B73_0097 | MTP_W22_0097 | DX572331 | mtp0097 | 7 | 3 | |
| orp2zm8 | putative AP endonuclease [Sorghum bicolor] | MTP_B73_0098 | DX572316 | MTP_B73_0098 | MTP_W22_0098 | DX572336 | mtp0098 | 1 | 0 | |
| p24till | Hypothetical protein | MTP_B73_0115 | EI183456 | MTP_B73_0115 | mtp0115 | 1 | 0 | |||
| pc090048 | Dihydrodipicolinate synthase | MTP_B73_0158 | EI951917 | MTP_B73_0158 | MTP_W22_0158 | EI951921 | mtp0158 | 4 | 2 | |
| pc096052 | ARF1 (AUXIN RESPONSE FACTOR 1); transcription factor | MTP_B73_0157 | EI951918 | MTP_B73_0157 | MTP_W22_0157 | EI951922 | mtp0157 | 4 | 1 | |
| pc120903 | ATCM2 (CHORISMATE MUTASE 2) | MTP_B73_0159 | EI504707 | MTP_B73_0159 | MTP_W22_0159 | EI504712 | mtp0159 | 0 | 0 | |
| pl1zm2 | similar to gb protein [Sorghum bicolor]; Protein of unknown function (DUF1296); pfam06972 | MTP_B73_0104 | DX572322 | MTP_B73_0104 | MTP_W22_0104 | DX572337 | mtp0104 | 1 | 1 | |
| pl1zm3 | putative Mechanosensitive ion channel; pfam00924 | MTP_B73_0106 | DX575019 | MTP_B73_0106 | MTP_W22_0106 | DX575004 | mtp0106 | 4 | 1 | |
| putpan1 | Hypothetical protein | MTP_B73_0044 | EI951919 | MTP_B73_0044 | MTP_W22_0044 | EI951923 | mtp0044 | 0 | 0 | |
| r1zm4 | Zea mays genetic modifier (isr); Predicted phosphatase/ phosphohexomutase | MTP_B73_0099 | DX572318 | MTP_B73_0099 | MTP_W22_0099 | DX572340 | mtp0099 | 2 | 1 | |
| r1zm6 | putative aldose reductase-related protein [Zea mays] | MTP_B73_0100 | DX572319 | MTP_B73_0100 | MTP_W22_0100 | DX572338 | mtp0100 | 1 | 0 | |
| r1zm8 | putative glutathione peroxidase | MTP_B73_0102 | DX572320 | MTP_B73_0102 | MTP_W22_0102 | DX572339 | mtp0102 | 2 | 0 | |
| rad213 | Rad21-3 -like protein [Oryza sativa] | MTP_B73_0081 | DX575030 | MTP_B73_0081 | MTP_W22_0081 | DX575014 | mtp0081 | 2 | 2 | |
| rad214a | cohesion protein [Zea mays]; rec8/alpha-kleisin homolog | MTP_B73_0109 | DX572326 | MTP_B73_0109 | MTP_W22_0109 | DX572341 | mtp0109 | 1 | 1 | |
| rdr102 | RDR6 (RNA-DEPENDENT RNA POLYMERASE 6); nucleic acid binding like protein | MTP_B73_0128 | ED509329 | MTP_B73_0128 | MTP_W22_0128 | ED509335 | mtp0128 | 1 | 4 | |
| rdr104 | RDR1 (RNA-DEPENDENT RNA POLYMERASE 1) like protein | MTP_B73_0134 | ED989434 | MTP_B73_0134 | MTP_W22_0134 | ED989438 | mtp0134 | 2 | 1 | |
| rf2b2p | mitochondrial aldehyde dehydrogenase RF2B | MTP_B73_0082 | DX575020 | MTP_B73_0082 | MTP_W22_0082 | DX575005 | mtp0082 | 1 | 1 | |
| sbt | peptidase/ subtilase | MTP_B73_0122 | DX922424 | MTP_B73_0122 | MTP_W22_0122 | DX922428 | mtp0122 | 0 | 1 | |
| sde104a | DEAD-like helicase; Superfamily I DNA and RNA helicases and helicase subunits [Oryza sativa] | MTP_B73_0051 | DX572311 | MTP_B73_0051 | MTP_W22_0051 | DX572361 | mtp0051 | 1 | 1 | |
| sdg104 | SET domain-containing protein SET104 [Zea mays] | MTP_B73_0010 | DX572298 | MTP_B73_0010 | MTP_W22_0010 | DX572352 | mtp0010 | 0 | 1 | |
| sdg105 | SET domain protein 105 [Zea mays] | MTP_B73_0011 | DX572299 | MTP_B73_0011 | MTP_W22_0011 | DX572353 | mtp0011 | 2 | 0 | |
| sdg118a | SET domain-containing protein SET118 [Zea mays] | MTP_B73_0093 | DX575025 | MTP_B73_0093 | MTP_W22_0093 | DX575010 | mtp0093 | 0 | 2 | |
| sdg124 | enhancer of zeste-like protein 1 [Zea mays] | MTP_B73_0013 | DX572300 | MTP_B73_0013 | MTP_W22_0013 | DX572354 | mtp0013 | 1 | 3 | |
| sdg125 | enhancer of zeste-like protein 2 [Zea mays] | MTP_B73_0017 | DX572303 | MTP_B73_0017 | MTP_W22_0017 | DX572355 | mtp0017 | 1 | 0 | |
| sdg126v2 | enhancer of zeste-like protein 3 like protein | MTP_B73_0135 | ED989435 | MTP_B73_0135 | MTP_W22_0135 | ED989439 | mtp0135 | 1 | 1 | |
| sgb101a | silencing group B protein [Zea mays] | MTP_B73_0053 | DX575032 | MTP_B73_0053 | MTP_W22_0053 | DX575016 | mtp0053 | 1 | 0 | |
| sgb102a | silencing group B protein [Zea mays] | MTP_B73_0059 | DX575028 | MTP_B73_0059 | MTP_W22_0059 | DX575012 | mtp0059 | 0 | 1 | |
| sgb103 | silencing group B protein [Zea mays] | MTP_B73_0040 | DX572308 | MTP_B73_0040 | MTP_W22_0040 | DX572362 | mtp0040 | 1 | 0 | |
| tbp1zm2 | putative WRKY transcription factor | MTP_B73_0107 | DX572324 | MTP_B73_0107 | MTP_W22_0107 | DX572342 | mtp0107 | 0 | 0 | |
| tbp2zm7 | putative WRKY DNA -binding domain containing protein; pfam03106 | MTP_B73_0108 | DX572325 | MTP_B73_0108 | MTP_W22_0108 | DX572343 | mtp0108 | 0 | 0 | |
| wrky1a | WRKY1 | MTP_B73_0117 | ED509324 | MTP_B73_0117 | MTP_W22_0117 | ED509330 | mtp0117 | 4 | 2 | |
| xet1 | xyloglucan endo-transglycosylase homolog | MTP_B73_0056 | DX575021 | MTP_B73_0056 | MTP_W22_0056 | DX575006 | mtp0056 | 2 | 0 | |
| zmatg3 | APG3 autophagy 3-like protein | MTP_B73_0166 | ER885870 | MTP_B73_0166 | MTP_W22_0166 | ER885875 | mtp0166 | 0 | 1 | |
| zmco9a | transcription factor/ zinc ion binding | MTP_B73_0164 | ER885869 | MTP_B73_0164 | MTP_W22_0164 | ER885874 | mtp0164 | 1 | 1 | |
| zmglk1 | putative transcription factor ZmGLK1 | MTP_B73_0043 | DX575022 | MTP_B73_0043 | MTP_W22_0043 | DX575007 | mtp0043 | 1 | 0 | |
| zmlsd1b | putative polyamine oxidase [rice] | MTP_B73_0111 | DX575023 | MTP_B73_0111 | MTP_W22_0111 | DX575008 | mtp0111 | 5 | 2 | |
| zmm2b | putative MADS-domain transcription factor; m23 [Zea mays] | MTP_B73_0045 | DX575024 | MTP_B73_0045 | MTP_W22_0045 | DX575009 | mtp0045 | 0 | 0 | |
| zmnbs1 | DNA damage signaling and repair protein [Zea mays] | MTP_B73_0087 | DX575033 | MTP_B73_0087 | MTP_W22_0087 | DX575017 | mtp0087 | 0 | 2 | |
| zmphs1 | poor homologous synapsis 1 protein | MTP_B73_0120 | DX922423 | MTP_B73_0120 | MTP_W22_0120 | DX922427 | mtp0120 | 1 | 0 | |
| zmphya1 | phytochrome A1 apoprotein; PhyA1 | MTP_B73_0125 | ED509325 | MTP_B73_0125 | MTP_W22_0125 | ED509331 | mtp0125 | 1 | 2 | |
| zmphyb1 | phytochrome B1 | MTP_B73_0147 | EI504708 | MTP_B73_0147 | MTP_W22_0147 | EI504713 | mtp0147 | 0 | 0 | |
| zmphyb2 | phytochrome B2 apoprotein | MTP_B73_0148 | EI504709 | MTP_B73_0148 | MTP_W22_0148 | EI504714 | mtp0148 | 0 | 2 | |
| zmphyc1 | phytochrome C1 apoprotein; PhyC1 | MTP_B73_0126 | ED509336 | MTP_B73_0126 | MTP_W22_0126 | ED509337 | mtp0126 | 1 | 6 | |
| zmphyc2 | phytochrome C2 apoprotein; PhyC2 | MTP_B73_0127 | ED509326 | MTP_B73_0127 | MTP_W22_0127 | ED509332 | mtp0127 | 3 | 6 | |
| zmpif3 | hypothetical protein | MTP_B73_0132 | ED989436 | MTP_B73_0132 | MTP_W22_0132 | ED989440 | mtp0132 | 2 | 0 | |
| zmsgo2c | Hypothetical protein | MTP_B73_0151 | EI504710 | MTP_B73_0151 | MTP_W22_0151 | EI504715 | mtp0151 | 0 | 0 | |
| zmtgi1 | cyclin-dependent kinase inhibitor 1 | MTP_B73_0161 | ER885871 | MTP_B73_0161 | MTP_W22_0161 | ER885876 | mtp0161 | 1 | 0 | |
| zmtgi2 | putative cyclin-dependent kinase inhibitor 3 | MTP_B73_0169 | ER885872 | MTP_B73_0169 | MTP_W22_0169 | ER885877 | mtp0169 | 0 | 0 | |
| zmtmm | TOO MANY MOUTHS | MTP_B73_0137 | EI392744 | MTP_B73_0137 | MTP_W22_0137 | EI392750 | mtp0137 | 4 | 1 | |
| swi3 | Hypothetical SWIRM domain containing protein | MTP_B73_0168 | FI142685 | MTP_B73_0168 | MTP_CW_W22_0168 | FI146760 | mtp0168 | 1 | 0 | |
| zmatg10a | Hypothetical ATG10 (AUTOPHAGY 10) transporter | MTP_B73_0173 | FI142687 | MTP_B73_0173 | FI146749 | MTP_CW_W22_0173 | FI146768 | mtp0173 | 0 | 1 |
| dng102 | DNA glycosylase family protein | MTP_B73_0174 | FI142678 | MTP_B73_0174 | MTP_CW_W22_0174 | FI146754 | mtp0174 | 2 | 2 | |
| sdg118b | SET domain-containing protein SET118 | MTP_B73_0175 | FI142684 | MTP_B73_0175 | MTP_CW_W22_0175 | FI146759 | mtp0175 | 0 | 1 | |
| ago118 | Putative Piwi domain containing protein | MTP_B73_0176 | FI142676 | MTP_B73_0176 | FI146748 | MTP_CW_W22_0176 | FI146752 | mtp0176 | 0 | 0 |
| rdr101a | RNA-dependent RNA polymerase | MTP_B73_0177 | FI142681 | MTP_B73_0177 | MTP_CW_W22_0177 | FI146756 | mtp0177 | 1 | 2 | |
| rdr106 | RDR6 (RNA-DEPENDENT RNA POLYMERASE 6) | MTP_B73_0179 | FI142682 | MTP_B73_0179 | MTP_CW_W22_0179 | FI146757 | mtp0179 | 0 | 0 | |
| ago105 | hypothetical Argonaute 4 protein | MTP_B73_0180 | FI142675 | MTP_B73_0180 | FI146750 | MTP_CW_W22_0180 | FI146766 | mtp0180 | 0 | 8 |
| rif1c | Putative R-interacting factor 1 | MTP_B73_0182 | FI142683 | MTP_B73_0182 | MTP_CW_W22_0182 | FI146758 | mtp0182 | 0 | 1 | |
| zmtgi3 | Rolled leaf1 | MTP_B73_0184 | FI142692 | MTP_B73_0184 | MTP_CW_W22_0184 | FI146765 | mtp0184 | 0 | 0 | |
| pecme | Putative Pectinesterase family protein | MTP_B73_0192 | FI142680 | MTP_B73_0192 | MTP_CW_W22_0192 | FI146767 | mtp0192 | 0 | 0 | |
| ccd1ver2 | Putative carotenoid cleavage dioxygenase | MTP_B73_0194 | FI142677 | MTP_B73_0194 | MTP_CW_W22_0194 | FI146753 | mtp0194 | 0 | 0 |